Write and revise the Methods section of research papers to ensure reproducibility; use when preparing an IMRAD manuscript or responding to journal/reporting-guideline requirements (e.g., CONSORT/STROBE/PRISMA).

Machine learning toolkit for genomic interval (BED) data; use it when you need to tokenize BED collections and train embeddings for regions/cells/labels, build consensus peak universes, or run similarity search and downstream ML on chromatin accessibility datasets.

> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)

Programmatically query public single-cell study metadata from the Broad Institute Single Cell Portal REST API when you need to search and filter datasets by organism, tissue, disease, or cell type without an API key.

Access ClinPGx pharmacogenomics data (successor to PharmGKB) when you need to query gene-drug interactions, CPIC guidelines, allele functions, and drug-label PGx content for precision medicine and genotype-guided dosing.

Query the openFDA API to retrieve FDA regulatory datasets (drugs, devices, adverse events, recalls, submissions, UNII) when you need programmatic safety/regulatory evidence for analysis or research.

Query the Reactome REST API for pathway content and enrichment analyses; use when you need curated pathway data, reaction details, or overrepresentation results for a gene list.

Integrate with the Benchling R&D platform when you need to programmatically manage registry entities, inventory, ELN entries, workflows, events, or data warehouse analytics via API/SDK.

Calculate precise buffer recipes with accurate mass and volume measurements for molecular biology and biochemistry. Supports PBS, RIPA, and TAE with concentration scaling, stock solution preparation, pH adjustment guidance, and step-by-step protocols.

De-identify DICOM medical images by removing PHI tags for research sharing, with audit logging and study-linkage preservation support.

Perform fast file name and content searches with ripgrep (rg); use it when you need to locate files by glob/regex, find keywords across directories, or replace common find/grep workflows.

Replace an ID photo background color (blue/white/red) and/or add a configurable text watermark when you need compliant ID-photo variants from local JPG/PNG files.

A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Use when you need to perform a documentation gap analysis, draft or update a Quality Manual, create required procedures/work instructions, build Medical Device Files (MDF), interpret ISO 13485 clauses, or identify missing documents for certification (often triggered by ISO 13485, QMS certification, FDA QMSR, EU MDR, or quality system documentation requests).

Filter and match postdoctoral fellowship opportunities based on applicant nationality, years since PhD, and research field from a curated database.

An intelligent tool for precision medical literature search using PubMed's E-utilities API.

Core Smart Ralph skill defining common arguments, execution modes, and shared behaviors across all Ralph plugins.

For fix goals: reproduce the failure BEFORE work, verify resolution AFTER.

This skill guides the creation of effective skills. For conceptual background, structure details, and writing best practices, read [references/best-practices.md](references/best-practices.md).

Search the codebase for analogous features and reusable building blocks before planning a change. Returns structured findings. Does not write code or plans.

dpia-sentinel-oliver-schmidt-prietz

Build VS Code extensions from scratch or convert existing JS/React/Vue apps. Supports commands, webviews (React/Vue), custom editors, tree views, and AI agent integration via file-bridge IPC. Use when user wants to create a VS Code extension, convert a web app to an extension, add webviews or custom UIs to VS Code, implement tree views, build custom file editors, integrate with AI agents, or package/publish extensions (.vsix).

Claude Code plugins follow a standardized directory structure with automatic component discovery. Understanding this structure enables creating well-organized, maintainable plugins that integrate seam

Expert guidance for building cross-platform desktop applications with Tauri 2.0 and Rust. Use when developing Tauri apps including commands and IPC, file system operations, window management, state management, system tray, menus, plugin development, security configuration (capabilities/permissions), bundling/distribution, and auto-updates. Covers patterns for editor applications requiring file dialogs, native menus, and frontend-backend communication.

Use when adding, removing, moving, or renaming Swift source files in the dd-sdk-ios Xcode project. Use when the task involves file creation, deletion, or relocation in any module (DatadogRUM, DatadogLogs, DatadogCore, etc.). Use when you would otherwise reach for Write, Bash mv/mkdir/rm, or manual pbxproj editing for file management.

Run a command in a tmux pane and continuously monitor its output, notifying the user via system notification if something fails.

Read an ADO or GitHub work item, research similar past PRs, implement the fix, and leave the branch ready for /create-pr.

Fetch all open security alerts from S360/ADO, Dependabot, and npm audit, apply all fixes, verify, commit, and create a PR.

Fix all vulnerabilities on the current branch using npm audit. Local branch only — no ADO/GitHub queries.

Use claudraband CLI to control Claude Code sessions programmatically. Use when running, scripting, or automating Claude Code via the claudraband CLI — sending prompts, listing/resuming sessions, or working in interactive REPL mode. Triggers on any mention of claudraband, claudraband-cli, npx claudraband, bunx claudraband, or automating Claude Code sessions. Used when you need to ask yourself (Claude) a question

Definitive guidelines for building robust, performant, and maintainable AI agents using smolagents, focusing on practical patterns and avoiding common pitfalls.

Build and solve Walrasian general equilibrium models with theory derivations and Julia computation

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Create new Beamer lecture from papers and materials. Guided workflow with notation consistency.

Create and compile beautiful Beamer presentations following the Rhetoric of Decks philosophy. Use when making slides, creating decks, or compiling .tex presentation files.

Run a comprehensive consistency audit across the entire repository, fix all issues found, and loop until clean.

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Verifies required tools (Quarto, uv, Python, R, Stata, TeX) and Jupyter kernels are installed. Use when setting up or troubleshooting.

Transfers prose edits from latex/index.tex (Overleaf) back into index.qmd. Use after pulling LaTeX edits from a collaborator.

A reference guide for citation verification in academic paper writing, providing verification principles and best practices.