> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)

Accesses BioGRID ORCS CRISPR screen data (organisms, screens, scores). Invoke when user needs to search CRISPR screens, get vocabulary, or retrieve gene scores.

Access ClinPGx pharmacogenomics data (successor to PharmGKB) when you need to query gene-drug interactions, CPIC guidelines, allele functions, and drug-label PGx content for precision medicine and genotype-guided dosing.

Accesses Comparative Toxicogenomics Database (CTD) for chemical, gene, disease, and pathway interaction data. Invoke when user needs to query CTD, retrieve toxicogenomics data, or investigate chemical-disease relationships.

Access Ensembl REST API for vertebrate genomic data; use when you need gene/ID lookups, sequence retrieval, variant effect prediction (VEP), or homology/assembly coordinate mapping.

Analyze funding abstracts and project metadata to identify topic shifts and forecast near-term grant priorities.

Access the KEGG database API to retrieve biological data (genes, pathways, compounds, drugs). Invoke when the user asks to search, list, or get details from KEGG.

Query the Open Targets Platform to retrieve targets, diseases, or evidence records when you need target-disease association data and evidence-based scores for therapeutic discovery.

Integrate with the Benchling R&D platform when you need to programmatically manage registry entities, inventory, ELN entries, workflows, events, or data warehouse analytics via API/SDK.

De-identify DICOM medical images by removing PHI tags for research sharing, with audit logging and study-linkage preservation support.

Perform fast file name and content searches with ripgrep (rg); use it when you need to locate files by glob/regex, find keywords across directories, or replace common find/grep workflows.

A toolkit for preparing ISO 13485:2016 certification documentation for medical device QMS. Use when you need to perform a documentation gap analysis, draft or update a Quality Manual, create required procedures/work instructions, build Medical Device Files (MDF), interpret ISO 13485 clauses, or identify missing documents for certification (often triggered by ISO 13485, QMS certification, FDA QMSR, EU MDR, or quality system documentation requests).

An intelligent tool for precision medical literature search using PubMed's E-utilities API.

> **Source**: [https://github.com/aipoch/medical-research-skills](https://github.com/aipoch/medical-research-skills)

Framework for assessing IT service providers, technology vendors, and third-party partners. Creates structured risk assessments across financial, operational, compliance, security, and reputational dimensions with regulatory checklists (GDPR, DORA, NIS2, SOX). Use when: (1) Evaluating new vendors or technology providers, (2) Conducting third-party risk assessments for procurement, (3) Performing critical vendor due diligence for regulatory compliance, (4) Creating vendor onboarding documentation, (5) Establishing ongoing vendor monitoring processes, (6) Assessing vendor concentration risk, or (7) Generating executive-level vendor risk reports.

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Full autonomous research workflow using swarm mode for parallel execution

Create new Beamer lecture from papers and materials. Guided workflow with notation consistency.

Create and compile beautiful Beamer presentations following the Rhetoric of Decks philosophy. Use when making slides, creating decks, or compiling .tex presentation files.

Run a comprehensive consistency audit across the entire repository, fix all issues found, and loop until clean.

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Meta-analysis frameworks and methods for mediation studies

A reference guide for citation verification in academic paper writing, providing verification principles and best practices.

Strip AI writing patterns from academic text while preserving economics content and formal structure.

Apply EconML for causal inference combining machine learning and econometrics

Questionnaire and survey design with Likert scales and coding

Run NLP and CV model inference via Hugging Face free-tier API

AI scientist framework for autonomous biological research workflows

Search and analyze clinical trials via the ClinicalTrials.gov v2 API

Clinical trial registry database search API

Epidemiological study designs, measures of association, and public health ana...

AI security papers from top-4 security conferences

Apply development economics research methods and data sources

Federal Reserve Economic Data API for US economic indicators

Systematic approaches to curriculum design using backward design and alignment

Research methods and analytical frameworks for philosophical inquiry and scho...

Agent skills collection for legal research and automation

Legal research methods, case law analysis, and compliance tools

Computational physics methods, simulations, and research tools

Psychological research methods, experimental design, and analysis

Set up citation alerts and track new papers citing key references

Systematic paper recommendation and discovery using multiple methods

Guide to Zotero arXiv Daily for personalized daily paper recommendations