End-to-end CLIP-seq analysis from FASTQ to binding sites and motif enrichment. Use when analyzing protein-RNA interactions from CLIP-based methods.

Use when configuring Clippy for Rust projects with TOML config, lint groups, attributes, and workspace setup.

Use when developing custom Clippy lints, implementing lint passes, and contributing to Clippy for Rust code standards.

Use when applying Clippy lint categories for Rust code including correctness, performance, style, and custom lint configuration.

Use this skill to help developers implement **Clix user identification** and

A guide to using clj-kondo for Clojure code linting, including configuration, built-in linters, and writing custom hooks.

Expert on Intel 8284A Clock Generator for ES-1841. Provides guidance on system timing, CPU clock generation, peripheral clock, reset circuit, and wait state synchronization.

Aero is an EDN configuration library with reader tag extensions for profiles, environment variables, and references. Use when working with configuration files, environment-specific settings, or when you need explicit, intentful config management in Clojure.

Turn Clojure functions into CLIs with babashka.cli. Use when working with command-line argument parsing, building CLIs, subcommand dispatching, option validation, or creating tools with babashka/clojure.

File system operations with babashka.fs. Use when working with file I/O, directory traversal, path manipulation, file copying/moving, temp files, archives (zip/gzip), or file metadata.

Clojure library for shelling out and spawning sub-processes. Use when working with external programs, command execution, piping between processes, or handling process I/O streams.

High-performance JSON and CSV parsing library for Clojure. Use when working with JSON or CSV data and need fast in Clojure, efficient parsing/writing with a clojure.data.json/clojure.data.csv compatible API.

clojure-coffi

Async programming with channels, go blocks, and CSP in Clojure. Use when working with async operations, channel communication, pub/sub patterns, concurrent pipelines, or CSP-style coordination.

Reference for donut.party/system - component lifecycle and dependency injection library for Clojure. Use when working with component definitions, system management, refs between components, or lifecycle signals (start/stop/suspend/resume). Triggers on donut.system imports, ::ds/start, ::ds/stop, ::ds/config, ds/ref, or component-based architecture. Prefer using donut.system over mount, integrant, and stuart sierra's component.

Use this skill BEFORE using writing any Clojure code. It teaches how to use the Clojure REPL (via brepl) so you can test code, check if edited files compile, verify function behavior, or interact with a running REPL session.

clojure-malli

Repair unbalanced parentheses, brackets, and braces in Clojure, ClojureScript, and EDN files. Use when you encounter delimiter mismatch syntax errors after editing .clj, .cljs, .cljc, or .edn files, or on clojure syntax errors.

Realtime bidirectional communications between Clojure server and ClojureScript client. Use when building apps where BOTH client and server use sente - NOT for connecting to third-party WebSocket APIs. Provides server push, realtime updates, and reliable async messaging with automatic WebSocket/Ajax fallback.

Structured telemetry library for Clojure/Script. Use when working with logging, tracing, structured logging, events, signal handling, observability, or replacing Timbre/tools.logging.

Property-based testing with clojure.test.check. Use when writing generative tests, creating custom generators, or debugging shrinking behavior. Triggers on test.check imports, prop/for-all, gen/* usage, or questions about property-based testing in Clojure.

Trove is a minimal logging facade for Clojure/Script supporting both traditional and structured logging. Use when writing libraries that need logging without forcing a backend choice, or when you need rich data-oriented logging with flexible filtering.

Generate comprehensive clonality statistics and diversity visualizations for TCR/BCR repertoire analysis. Quantifies clonal expansion, measures diversity metrics (Shannon, Simpson, Gini), and creates publication-ready plots.

clone-website

Close task in tracker. Use when the user invokes /close or asks to close a tracker issue.

Processes for routing community insights/actions and communicating outcomes

Design closed-loop prompts with Request-Validate-Resolve structure for reliable agentic workflows. Use when creating self-validating agents, adding feedback loops, or improving agent reliability through verification.

El cerebro tiende a completar formas incompletas o fragmentadas, rellenando los

Expert skill for integrating cloud AI APIs (Claude, GPT-4, Gemini). Covers secure API key management, prompt injection prevention, rate limiting, cost optimization, and protection against data exfiltration attacks.

Design cloud-native architectures with service selection and cost optimization

AWS cloud infrastructure and services expert. Use when working with AWS CLI, Terraform for AWS, Lambda, S3, EC2, DynamoDB, IAM, API Gateway, or any AWS service configuration, deployment, troubleshooting, or best practices.

Flow Nexus coding challenges and gamification. Use for browsing challenges, submitting solutions, tracking achievements, and competing on leaderboards.

Shared utilities for faber-cloud plugin - configuration loading, pattern resolution, auto-discovery

Comprehensive guide to cloud pricing models, cost structures, and optimization strategies across major providers.

End-to-end cloud deployment skill for Kubernetes (AKS/GKE/DOKS) with CI/CD pipelines. Covers managed services integration (Neon, Upstash), ingress configuration, SSL certificates, GitHub Actions workflows with selective builds, and Next.js build-time vs runtime environment handling. Battle-tested from 9-hour deployment session.

Complete guide for CloudBase cloud functions development - runtime selection, deployment, logging, invocation, and HTTP access configuration.

This skill guides writing cloud-init configurations for VM provisioning. Use when creating user_data blocks in Terraform/OpenTofu, or cloud-init YAML for AWS, DigitalOcean, GCP, or Azure instances.

Deploy to cloud Kubernetes clusters - DigitalOcean DOKS primary, with multi-cloud patterns for AWS EKS and GKE. Use when deploying Phase 5 to production cloud environments. (project)

Query GCP Monitoring API using the bundled `cloud_metrics.py` script.

Plan and execute cloud migrations with assessment, database migration, application refactoring, and cutover strategies across AWS, Azure, and GCP.

AWS, GCP, Azure data platforms, infrastructure as code, and cloud-native data solutions

Tool suite for deploying and managing Google Cloud Run services. Use for deployments, logging, and service inspection.

Implement comprehensive cloud security across AWS, Azure, and GCP with IAM, encryption, network security, compliance, and threat detection.

Set up a fresh cloud/mobile Claude Code environment with all tools needed for AILANG development.

Create PopKit Cloud account, generate API key, and configure local connection

Optimize cloud storage across AWS S3, Azure Blob, and GCP Cloud Storage with compression, partitioning, lifecycle policies, and cost management.

Cloud storage integration with signed URLs, visibility control, multi-tenant path conventions, and presigned uploads for direct client uploads.

Flow Nexus user management and system utilities. Use for profile management, storage operations, real-time subscriptions, and platform administration.

cloudflare-access-setup

cloudflare-access-troubleshoot