name: review-r description: Run the R code review protocol on R scripts. Checks code quality, reproducibility, domain correctness, and professional standards. Produces a report without editing files. disable-model-invocation: true argument-hint: "[filename or 'all' or 'LectureN']" allowed-tools: ["Read", "Grep", "Glob", "Write", "Task"]

Review R Scripts

Run the comprehensive R code review protocol.

Steps

1. Identify scripts to review:

   • If $ARGUMENTS is a specific .R filename: review that file only
   • If $ARGUMENTS is LectureN: review all R scripts matching that lecture
   • If $ARGUMENTS is all: review all R scripts in scripts/R/ and Figures/*/

2. For each script, launch the r-reviewer agent with instructions to:

   • Follow the full protocol in the agent instructions
   • Read .claude/rules/r-code-conventions.md for current standards
   • Save report to quality_reports/[script_name]_r_review.md

3. After all reviews complete, present a summary:

   • Total issues found per script
   • Breakdown by severity (Critical / High / Medium / Low)
   • Top 3 most critical issues

4. IMPORTANT: Do NOT edit any R source files. Only produce reports. Fixes are applied after user review.