name: humann-functional-profiler description: HUMAnN functional profiling skill for metagenomic pathway analysis allowed-tools:
- Read
- Write
- Glob
- Grep
- Edit
- WebFetch
- WebSearch
- Bash
metadata:
version: "1.0"
category: bioinformatics
tags:
- metagenomics
- functional
- pathway
- metabolism
HUMAnN Functional Profiler Skill
Purpose
Provide HUMAnN functional profiling for metagenomic pathway analysis.
Capabilities
- Gene family quantification
- MetaCyc pathway abundance
- UniRef annotation
- Stratified functional profiles
- Pathway coverage analysis
- Custom database integration
Usage Guidelines
- Run taxonomic profiling first
- Quantify gene families and pathways
- Stratify by organism when relevant
- Analyze pathway coverage
- Compare functional profiles
- Document database versions
Dependencies
- HUMAnN3
- eggNOG-mapper
- Prokka
Process Integration
- Shotgun Metagenomics Pipeline (shotgun-metagenomics)