name: ga4gh-standards-validator description: GA4GH standards compliance skill for data sharing and interoperability allowed-tools:

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• Bash metadata: version: "1.0" category: bioinformatics tags:
  • infrastructure
  • standards
  • ga4gh
  • interoperability

GA4GH Standards Validator Skill

Purpose

Provide GA4GH standards compliance for data sharing and interoperability.

Capabilities

• VCF/BAM format validation
• htsget API compliance
• Beacon protocol testing
• DRS/WES/TES compliance
• Data model validation
• Interoperability testing

Usage Guidelines

• Validate file formats against specifications
• Test API compliance for data sharing
• Implement Beacon for variant queries
• Ensure workflow execution standards compliance
• Validate data models for exchange
• Document compliance status

Dependencies

• GA4GH toolkits
• htslib
• Beacon v2

Process Integration

• Genomic Data Governance (genomic-data-governance)
• Reproducible Research Workflow (reproducible-research)