name: methscope description: Use when working with the MethScope R package, its tutorial, MRMP embedding workflows, methylation input files, cell type prediction, training, deconvolution, visualization, or package internals.
MethScope Skill
Use this skill for MethScope package usage, analysis, and development tasks.
Read these files as needed:
../core/INSTRUCTIONS.mdfor scope, triggers, and guardrails../core/WORKFLOWS.mdfor common package workflows../core/REFERENCES.mdfor function names, files, and reference paths
Operating guidance
- Prefer documented MethScope workflows over generic methylation-analysis advice
- Use the tutorial and vignette examples as the default source of usage patterns
- Keep file format assumptions explicit, especially for
.cgand.cm - Treat the repository root as the directory containing
DESCRIPTION - For code changes, inspect the relevant files under
R/,vignettes/,man/,docs/, andinst/extdata/