name: string-network-analyzer description: STRING protein interaction network skill for functional enrichment and network visualization allowed-tools:

• Read
• Write
• Glob
• Grep
• Edit
• WebFetch
• WebSearch
• Bash metadata: version: "1.0" category: bioinformatics tags:
  • proteomics
  • network
  • interaction
  • functional

STRING Network Analyzer Skill

Purpose

Provide STRING protein interaction network analysis for functional enrichment and network visualization.

Capabilities

• Protein-protein interaction queries
• Network clustering
• Functional enrichment analysis
• Cytoscape integration
• Network visualization
• Interaction confidence scoring

Usage Guidelines

• Query interactions with appropriate confidence thresholds
• Cluster networks to identify modules
• Perform functional enrichment on modules
• Visualize networks with meaningful layouts
• Export to Cytoscape for advanced visualization
• Document confidence thresholds and filters

Dependencies

• STRING-db
• Cytoscape
• NetworkX

Process Integration

• Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
• Multi-Omics Data Integration (multi-omics-integration)