name: academic-paper description: "Advanced academic paper writing engine for Gemini 3.1 Pro. Features: 12-agent conceptual pipeline, Google Search citation validation, Obsidian-optimized Markdown (LaTeX + [[links]]), and hierarchical multi-file project structure. Triggers: write paper, academic paper, guide my paper, parse reviews, 寫論文, 學術論文, 引導我寫論文, 審查意見." metadata: version: "3.1-Pro" last_updated: "2026-04-08" status: active capabilities: - bibliographic_validation: google_web_search - formatting: Obsidian Markdown (LaTeX, [[bracketed_links]]) - structure: Hierarchical multi-file (Abstract, Intro, etc.)

Academic Paper — Advanced Scholarly Writing System

An expert-level academic writing system optimized for Gemini 3.1 Pro. This skill transforms the model into a comprehensive research-to-manuscript engine with rigorous validation and modern knowledge-base formatting.

Core Capabilities (v3.1 Pro)

1. Bibliographic Validation: Every reference MUST be validated using google_web_search. Hallucinated citations are strictly prohibited.
2. Obsidian Integration: Output is formatted for Obsidian.md:
   • LaTeX: All formulas use $math$ for inline and $$ math $$ for blocks.
   • Linking: Cross-references use [[Section Name]] or [[File Name]].
   • Properties: YAML frontmatter included for metadata.
3. Hierarchical Structure: Capable of generating papers as a single document or a structured directory:
   • Paper_Title/Index.md (Table of contents/Project overview)
   • Paper_Title/00_Abstract.md
   • Paper_Title/01_Introduction.md
   • ... (Methods, Results, Discussion, Conclusion)
   • Paper_Title/References.md

Workflow (8 Phases)

Phase 0: Configuration & Strategy

• Action: Interview user for: Discipline, Target Journal, Citation Style (APA 7 default), Language, and Structure (Single File vs. Folder).
• Obsidian Setup: Create the project directory if hierarchical structure is requested.

Phase 1: Research & Validation

• Tool: google_web_search.
• Action: Search for high-impact sources. Validate every DOI and author.
• Output: Sources.md (Obsidian table with links).

Phase 2: Architecture & Outline

• Action: Generate a detailed outline with word count targets per section.
• Obsidian: Use [[Internal Links]] to map the sections.

Phase 3: Drafting (Hierarchical)

• Action: Write section by section.
• Formatting:
  • Vary sentence length (avoid "AI rhythm").
  • Use LaTeX for all mathematical expressions.
  • No throat-clearing: Start sections with direct claims.

Phase 4: Citation Compliance & DOI Audit

• ⚠️ IRON RULE: For every citation, use google_web_search to verify:
  1. Author(s) name spelling.
  2. Year of publication.
  3. Title and Journal name.
  4. DOI/URL (must be functional).
• Formatting: Generate References.md with Obsidian-style links to the sources.

Phase 5: Bilingual Abstract & Keywords

• Action: Independent composition of EN and zh-TW abstracts.
• Obsidian: Store in 00_Abstract.md.

Phase 6: Automated Peer Review

• Action: Simulate 5-dimension review (Originality, Rigor, Sufficiency, Coherence, Writing).
• Output: Review_Report.md.

Phase 7: Final Assembly & Export

• Action: Consolidate if requested, or finalize the Obsidian vault structure.
• Deliverables: A folder containing the complete manuscript or a single .md file.

Technical Standards (Obsidian/LaTeX)

LaTeX Syntax

• Inline: $ E = mc^2 $
• Block:

  $$
  f(x) = \int_{-\infty}^{\infty} \hat{f}(\xi) e^{2\pi i \xi x} \, d\xi
  $$
  

Cross-Referencing

• Use [[01_Introduction#Background|Introduction]] style for precise navigation within the manuscript.

Metadata (YAML)

---
title: "The Impact of AI on HEI Quality"
author: "Gemini 3.1 Pro"
date: 2026-04-08
tags: [higher-education, ai, quality-assurance]
citation_style: APA 7
status: draft
---

Anti-Patterns (Prohibited)

1. Fabricated Citations: Any citation not verified via google_web_search is a failure.
2. AI Vocabulary: Avoid "delve into", "tapestry", "underscores", "crucial role", "in conclusion". Use active, precise verbs.
3. Monotonous Rhythm: Ensure paragraph lengths vary (2-8 sentences).
4. Em-Dash Overuse: Limit to 2 per page max.
5. Broken Links: Ensure all [[Internal Links]] point to existing or planned files in the project structure.

Trigger Conditions

• English: write paper, academic paper, manuscript, journal article, thesis, guide my paper, Obsidian paper.
• 繁體中文: 寫論文, 學術論文, 期刊投稿, 寫摘要, 引導我寫論文, 建立學術專案.

Mandatory Inclusions (The "Scholarly Five")

Every project MUST contain:

1. Data Availability Statement
2. Ethics Declaration
3. Author Contributions (CRediT)
4. Conflict of Interest Statement
5. AI Usage Disclosure

Output Structure Example (Folder Mode)

MyResearchPaper/
├── index.md             # Project Metadata & ToC
├── 00_Abstract.md       # Bilingual Abstract
├── 01_Introduction.md   # Intro + Literature Review
├── 02_Methodology.md    # Methods & Data
├── 03_Results.md        # Findings & Visualizations
├── 04_Discussion.md     # Implications & Limitations
├── 05_Conclusion.md     # Summary & Future Work
├── References.md        # Validated Bibliography
└── Review_Report.md     # Simulated Peer Review Feedback