name: perseus-statistical-analyzer description: Perseus statistical analysis skill for proteomics data analysis and visualization allowed-tools:

• Read
• Write
• Glob
• Grep
• Edit
• WebFetch
• WebSearch
• Bash metadata: version: "1.0" category: bioinformatics tags:
  • proteomics
  • statistics
  • analysis
  • visualization

Perseus Statistical Analyzer Skill

Purpose

Enable Perseus statistical analysis for proteomics data analysis and visualization.

Capabilities

• Missing value imputation
• Normalization strategies
• Statistical testing (t-test, ANOVA)
• Hierarchical clustering
• PCA and enrichment analysis
• Publication-quality plots

Usage Guidelines

• Impute missing values appropriately
• Normalize data before statistical analysis
• Apply appropriate statistical tests
• Visualize results with clustering and PCA
• Generate publication-quality figures
• Document normalization and imputation methods

Dependencies

• Perseus
• MSstats
• limma

Process Integration

• Mass Spectrometry Proteomics Pipeline (ms-proteomics-pipeline)
• Multi-Omics Data Integration (multi-omics-integration)